Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rrna maturation rnase ybey | DW035_01805 | Not Available | Positive | 428767 - 429189 | 16149.3 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | DW035_01810 | Not Available | Positive | 429227 - 431098 | 69555.9 |
| adenine phosphoribosyltransferase | DW035_01815 | Not Available | Positive | 431156 - 431680 | 19287.6 |
| excinuclease abc subunit uvrc | DW035_01820 | Not Available | Positive | 431785 - 433617 | 70302.5 |
| d-tyrosyl-trna(tyr) deacylase | DW035_01825 | Not Available | Positive | 433650 - 434102 | 16484.1 |
| pyrophosphatase | DW035_01830 | Not Available | Positive | 434105 - 434425 | 12174.5 |
| deoxyribose-phosphate aldolase | DW035_01835 | Not Available | Positive | 434431 - 435372 | 34725.1 |
| polyprenyl synthetase family protein | DW035_01840 | Not Available | Negative | 435436 - 436410 | 35648.9 |
| dna polymerase i | DW035_01845 | Not Available | Positive | 436505 - 439273 | 104554.0 |
| duf3836 domain-containing protein | DW035_01850 | Not Available | Positive | 439427 - 439813 | 15068.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

