Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease | DW035_01705 | Not Available | Negative | 406601 - 407659 | 39765.3 |
| rhomboid family intramembrane serine protease | DW035_01710 | Not Available | Negative | 407656 - 408549 | 33924.7 |
| rhomboid family intramembrane serine protease | DW035_01715 | Not Available | Negative | 408524 - 409198 | 25245.5 |
| hypothetical protein | DW035_01720 | Not Available | Negative | 409265 - 409915 | 25856.7 |
| signal peptidase i | DW035_01725 | Not Available | Negative | 409932 - 410849 | 34736.8 |
| s26 family signal peptidase | DW035_01730 | Not Available | Negative | 410853 - 412277 | 55129.5 |
| 4-hydroxy-tetrahydrodipicolinate reductase | DW035_01735 | Not Available | Negative | 412280 - 413035 | 27319.6 |
| duf2851 family protein | DW035_01740 | Not Available | Positive | 413119 - 414390 | 49044.6 |
| pp_00339 | DW035_01745 | Not Available | Negative | 414392 - 415378 | Not Available |
| acyl-coa thioesterase | DW035_01750 | Not Available | Positive | 415392 - 415799 | 15574.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

