Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | DW035_01655 | Not Available | Positive | 385136 - 385831 | 25615.6 |
| s-ribosylhomocysteine lyase | DW035_01660 | Not Available | Positive | 385839 - 386318 | 18008.9 |
| duf4982 domain-containing protein | DW035_01665 | Not Available | Negative | 386385 - 388790 | 90259.8 |
| beta-glycosidase | DW035_01670 | Not Available | Negative | 388800 - 390410 | 59575.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_01675 | Not Available | Negative | 390494 - 392191 | 64043.5 |
| tonb-dependent receptor | DW035_01680 | Not Available | Negative | 392205 - 395246 | 112533.0 |
| hypothetical protein | DW035_01685 | Not Available | Negative | 395267 - 396799 | 57161.2 |
| hybrid sensor histidine kinase/response regulator | DW035_01690 | Not Available | Positive | 396974 - 401071 | 155899.0 |
| protein translocase subunit secdf | DW035_01695 | Not Available | Negative | 401290 - 404283 | 109121.0 |
| m3 family peptidase | DW035_01700 | Not Available | Negative | 404489 - 406582 | 78948.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

