Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| licd family protein | DW035_01555 | Not Available | Positive | 355371 - 356282 | 35694.3 |
| glycerol-3-phosphate cytidylyltransferase | DW035_01560 | Not Available | Positive | 356346 - 357686 | 51011.0 |
| alanine--glyoxylate aminotransferase family protein | DW035_01565 | Not Available | Positive | 357694 - 358773 | 39690.1 |
| tigr00341 family protein | DW035_01570 | Not Available | Negative | 358966 - 360324 | 50687.9 |
| lipopolysaccharide biosynthesis protein | DW035_01575 | Not Available | Negative | 360378 - 361868 | 56429.5 |
| holliday junction branch migration dna helicase ruvb | DW035_01580 | Not Available | Negative | 361877 - 362902 | 37933.5 |
| ferredoxin | DW035_01585 | Not Available | Positive | 363022 - 363828 | 29083.7 |
| trna 2-thiouridine(34) synthase mnma | DW035_01590 | Not Available | Positive | 363846 - 364973 | 42550.4 |
| duf4976 domain-containing protein | DW035_01595 | Not Available | Negative | 365050 - 366618 | 61338.7 |
| duf4981 domain-containing protein | DW035_01600 | Not Available | Negative | 366643 - 370200 | 133959.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

