Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_15790 | Not Available | Negative | 3637767 - 3639344 | 61117.2 |
| hypothetical protein | DW035_15795 | Not Available | Negative | 3639417 - 3640487 | 41633.1 |
| hypothetical protein | DW035_15800 | Not Available | Negative | 3640633 - 3641643 | 38367.8 |
| fad-binding oxidoreductase | DW035_15805 | Not Available | Negative | 3641895 - 3643121 | 44149.3 |
| gamma carbonic anhydrase family protein | DW035_15815 | Not Available | Positive | 3644346 - 3644876 | 18934.7 |
| low specificity l-threonine aldolase | DW035_15820 | Not Available | Negative | 3644953 - 3645987 | 38270.0 |
| dna-binding response regulator | DW035_15825 | Not Available | Negative | 3646007 - 3646708 | 26441.3 |
| sensor histidine kinase | DW035_15830 | Not Available | Negative | 3646719 - 3648122 | 53343.7 |
| alpha-1,3/4-fucosidase | DW035_15840 | Not Available | Negative | 3650320 - 3652179 | 69561.6 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_15845 | Not Available | Negative | 3652358 - 3654031 | 64146.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

