Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_15675 | Not Available | Negative | 3618461 - 3618868 | 14676.0 |
| duf4595 domain-containing protein | DW035_15685 | Not Available | Positive | 3619311 - 3619823 | 19422.2 |
| hypothetical protein | DW035_15690 | Not Available | Positive | 3620049 - 3620552 | 17486.2 |
| deaminase | DW035_15695 | Not Available | Positive | 3620880 - 3621276 | 14088.9 |
| type ii toxin-antitoxin system rnlb family antitoxin | DW035_15700 | Not Available | Negative | 3621525 - 3621911 | 14935.2 |
| hypothetical protein | DW035_15705 | Not Available | Negative | 3621916 - 3622965 | 39326.6 |
| dna-binding protein | DW035_15710 | Not Available | Negative | 3623198 - 3623674 | 17824.7 |
| type ia dna topoisomerase | DW035_15715 | Not Available | Negative | 3623671 - 3625773 | 77971.1 |
| duf4099 domain-containing protein | DW035_15720 | Not Available | Negative | 3625861 - 3627381 | 57237.4 |
| recombinase | DW035_15725 | Not Available | Positive | 3627665 - 3628789 | 43578.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

