Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| group ii intron reverse transcriptase/maturase | DW035_15410 | Not Available | Negative | 3571339 - 3572985 | 63557.3 |
| trag family conjugative transposon atpase | DW035_15415 | Not Available | Negative | 3573556 - 3575637 | 79668.0 |
| duf4133 domain-containing protein | DW035_15420 | Not Available | Negative | 3575622 - 3575957 | 12477.7 |
| duf4134 domain-containing protein | DW035_15425 | Not Available | Negative | 3575987 - 3576286 | 10292.7 |
| conjugal transfer protein | DW035_15430 | Not Available | Negative | 3576435 - 3577157 | 26786.5 |
| duf3408 domain-containing protein | DW035_15435 | Not Available | Negative | 3577170 - 3577532 | 13966.4 |
| para family protein | DW035_15440 | Not Available | Negative | 3577536 - 3578294 | 28500.6 |
| mobilization protein | DW035_15450 | Not Available | Positive | 3579513 - 3580739 | 46535.0 |
| conjugal transfer protein trag | DW035_15455 | Not Available | Positive | 3580789 - 3582798 | 76004.0 |
| transcriptional regulator | DW035_15460 | Not Available | Negative | 3582874 - 3583488 | 23857.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

