Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_15100 | Not Available | Negative | 3515238 - 3515540 | 10904.0 |
| hypothetical protein | DW035_15105 | Not Available | Positive | 3516045 - 3516539 | 18231.4 |
| hypothetical protein | DW035_15110 | Not Available | Positive | 3516530 - 3516718 | 6678.93 |
| helix-turn-helix domain-containing protein | DW035_15115 | Not Available | Positive | 3517065 - 3518000 | 36228.9 |
| site-specific integrase | DW035_15120 | Not Available | Positive | 3518142 - 3519260 | 43474.8 |
| transposase | DW035_15125 | Not Available | Positive | 3519508 - 3520365 | 33369.8 |
| helix-turn-helix domain-containing protein | DW035_15130 | Not Available | Positive | 3520565 - 3520939 | 14142.9 |
| helicase | DW035_15135 | Not Available | Positive | 3520945 - 3522042 | 40866.6 |
| hypothetical protein | DW035_15140 | Not Available | Positive | 3522046 - 3523161 | 42693.9 |
| mobilization protein | DW035_15145 | Not Available | Positive | 3523444 - 3524847 | 54960.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

