Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose-phosphate pyrophosphokinase | DW035_15050 | Not Available | Negative | 3503132 - 3504070 | 34258.3 |
| thiamine phosphate synthase | DW035_15055 | Not Available | Negative | 3504163 - 3504771 | 23037.7 |
| phosphopyruvate hydratase | DW035_15060 | Not Available | Negative | 3505374 - 3506654 | 46160.1 |
| rubrerythrin family protein | DW035_15065 | Not Available | Negative | 3506819 - 3507397 | 21713.7 |
| stas domain-containing protein | DW035_15070 | Not Available | Positive | 3507745 - 3509439 | 61136.4 |
| helix-hairpin-helix domain-containing protein | DW035_15075 | Not Available | Negative | 3509663 - 3511630 | 77051.5 |
| duf4294 domain-containing protein | DW035_15080 | Not Available | Positive | 3511840 - 3512391 | 21321.2 |
| trmh family rna methyltransferase | DW035_15085 | Not Available | Negative | 3512445 - 3512990 | 20452.9 |
| quinolinate synthase nada | DW035_15090 | Not Available | Positive | 3513442 - 3514434 | 36684.4 |
| Trna-asp | Not Available | Not Available | Positive | 3515051 - 3515127 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

