Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit | DW035_15000 | Not Available | Negative | 3487372 - 3490599 | 119684.0 |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) small subunit | DW035_15005 | Not Available | Negative | 3490623 - 3491699 | 40101.6 |
| alpha-n-arabinofuranosidase | DW035_15010 | Not Available | Negative | 3492045 - 3493121 | 40821.2 |
| Trna-thr | Not Available | Not Available | Positive | 3493346 - 3493421 | Not Available |
| atp-binding protein | DW035_15020 | Not Available | Negative | 3493664 - 3497320 | 143950.0 |
| hypothetical protein | DW035_15025 | Not Available | Negative | 3497304 - 3497894 | 23310.3 |
| hypothetical protein | DW035_15030 | Not Available | Negative | 3497921 - 3499156 | 48720.1 |
| dna cytosine methyltransferase | DW035_15035 | Not Available | Positive | 3499340 - 3500347 | 38123.9 |
| restriction endonuclease | DW035_15040 | Not Available | Positive | 3500344 - 3501333 | 38043.0 |
| duf4080 domain-containing protein | DW035_15045 | Not Available | Negative | 3501364 - 3503001 | 62449.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

