Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trag family conjugative transposon atpase | DW035_14680 | Not Available | Negative | 3423076 - 3425577 | 95986.3 |
| duf4133 domain-containing protein | DW035_14685 | Not Available | Negative | 3425574 - 3425897 | 12308.4 |
| duf4134 domain-containing protein | DW035_14690 | Not Available | Negative | 3425909 - 3426208 | 10315.8 |
| hypothetical protein | DW035_14695 | Not Available | Negative | 3426227 - 3426814 | 21913.8 |
| duf3408 domain-containing protein | DW035_14700 | Not Available | Negative | 3426834 - 3427238 | 15141.2 |
| para family protein | DW035_14705 | Not Available | Negative | 3427219 - 3428022 | 30099.2 |
| hypothetical protein | DW035_14715 | Not Available | Positive | 3428428 - 3428706 | 9834.63 |
| hypothetical protein | DW035_14720 | Not Available | Positive | 3428727 - 3429182 | 17925.8 |
| relaxase | DW035_14725 | Not Available | Positive | 3429179 - 3430477 | 48058.7 |
| duf1810 domain-containing protein | DW035_14735 | Not Available | Positive | 3431800 - 3432192 | 14960.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

