Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoprenyl transferase | DW035_14525 | Not Available | Positive | 3395246 - 3395995 | 28669.5 |
| outer membrane protein assembly factor bama | DW035_14530 | Not Available | Positive | 3396005 - 3398656 | 101511.0 |
| omph family outer membrane protein | DW035_14535 | Not Available | Positive | 3398676 - 3399191 | 19216.1 |
| omph family outer membrane protein | DW035_14540 | Not Available | Positive | 3399271 - 3399825 | 21098.3 |
| glutamate racemase | DW035_14545 | Not Available | Positive | 3399929 - 3400774 | 31753.3 |
| beta-glucosidase bglx | DW035_14550 | Not Available | Negative | 3400843 - 3403128 | 83444.3 |
| duf1738 domain-containing protein | DW035_14555 | Not Available | Positive | 3403681 - 3404655 | 37329.5 |
| hypothetical protein | DW035_14560 | Not Available | Positive | 3404726 - 3405376 | 25719.4 |
| hypothetical protein | DW035_14565 | Not Available | Positive | 3405419 - 3405628 | 8052.5 |
| duf1273 family protein | DW035_14570 | Not Available | Positive | 3405640 - 3406188 | 21061.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

