Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_14275 | Not Available | Positive | 3333989 - 3334267 | 11081.9 |
| hamp domain-containing protein | DW035_14280 | Not Available | Negative | 3334314 - 3335780 | 54453.6 |
| sensor protein kdpd | DW035_14285 | Not Available | Negative | 3335787 - 3336917 | 43211.7 |
| trkh family potassium uptake protein | DW035_14290 | Not Available | Negative | 3336969 - 3338474 | 55635.5 |
| hypothetical protein | DW035_14295 | Not Available | Negative | 3338723 - 3339436 | 26059.7 |
| k(+)-transporting atpase subunit c | DW035_14300 | Not Available | Negative | 3339531 - 3340106 | 20846.2 |
| k(+)-transporting atpase subunit b | DW035_14305 | Not Available | Negative | 3340126 - 3342159 | 72518.1 |
| potassium-transporting atpase subunit kdpa | DW035_14310 | Not Available | Negative | 3342247 - 3343953 | 62109.5 |
| k(+)-transporting atpase subunit f | DW035_14315 | Not Available | Negative | 3343984 - 3344064 | 3104.06 |
| sigma-54-dependent fis family transcriptional regulator | DW035_14320 | Not Available | Negative | 3344379 - 3345707 | 49579.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

