Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| giy-yig nuclease family protein | DW035_14145 | Not Available | Negative | 3300802 - 3301650 | 32543.9 |
| restriction endonuclease subunit s | DW035_14150 | Not Available | Negative | 3301665 - 3302873 | 47253.8 |
| type i restriction-modification system subunit m | DW035_14155 | Not Available | Negative | 3302880 - 3305459 | 97248.9 |
| hypothetical protein | DW035_14160 | Not Available | Negative | 3305482 - 3305820 | 13093.7 |
| hypothetical protein | DW035_14165 | Not Available | Negative | 3306452 - 3308827 | 90239.1 |
| xre family transcriptional regulator | DW035_14170 | Not Available | Negative | 3308953 - 3309162 | 7820.67 |
| rlob domain-containing protein | DW035_14180 | Not Available | Negative | 3309615 - 3310187 | 22517.1 |
| atp-binding protein | DW035_14185 | Not Available | Negative | 3310200 - 3311408 | 46121.9 |
| nucleotide pyrophosphohydrolase | DW035_14190 | Not Available | Positive | 3312002 - 3312343 | 13085.6 |
| duf3408 domain-containing protein | DW035_14205 | Not Available | Positive | 3317199 - 3317645 | 17458.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

