Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| restriction endonuclease | DW035_13990 | Not Available | Positive | 3262147 - 3263085 | 35640.3 |
| hypothetical protein | DW035_13995 | Not Available | Positive | 3263102 - 3264640 | 59834.9 |
| dna methylase | DW035_14000 | Not Available | Negative | 3264749 - 3264889 | 4839.03 |
| atp-binding protein | DW035_14005 | Not Available | Positive | 3265111 - 3266436 | 51808.4 |
| hypothetical protein | DW035_14010 | Not Available | Positive | 3266476 - 3266982 | 19428.3 |
| dna methylase | DW035_14015 | Not Available | Negative | 3267317 - 3273043 | 215975.0 |
| duf1896 domain-containing protein | DW035_14020 | Not Available | Negative | 3273033 - 3273500 | 17175.9 |
| type ia dna topoisomerase | DW035_14025 | Not Available | Negative | 3273540 - 3275639 | 77542.9 |
| duf3945 domain-containing protein | DW035_14030 | Not Available | Negative | 3275668 - 3277032 | 51311.5 |
| tetr/acrr family transcriptional regulator | DW035_14035 | Not Available | Positive | 3277251 - 3277862 | 23490.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

