Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pd-(d/e)xk nuclease family protein | DW035_13890 | Not Available | Negative | 3234000 - 3236873 | 110560.0 |
| dna2/cas4 domain-containing protein | DW035_13895 | Not Available | Negative | 3236912 - 3240139 | 123929.0 |
| Trna-arg | Not Available | Not Available | Positive | 3240465 - 3240538 | Not Available |
| susc/raga family tonb-linked outer membrane protein | DW035_13905 | Not Available | Positive | 3241001 - 3244087 | 112262.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW035_13910 | Not Available | Positive | 3244113 - 3245723 | 59598.5 |
| endoglycosidase | DW035_13915 | Not Available | Positive | 3245761 - 3246864 | 41966.4 |
| duf1735 domain-containing protein | DW035_13920 | Not Available | Positive | 3246875 - 3248053 | 44084.2 |
| arac family transcriptional regulator | DW035_13925 | Not Available | Positive | 3248431 - 3249267 | 32117.6 |
| mannonate dehydratase | DW035_13930 | Not Available | Negative | 3249269 - 3250450 | 45078.0 |
| sdr family nad(p)-dependent oxidoreductase | DW035_13935 | Not Available | Negative | 3250469 - 3251401 | 33098.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

