Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_13790 | Not Available | Negative | 3215076 - 3215534 | 18161.0 |
| hypothetical protein | DW035_13795 | Not Available | Negative | 3215542 - 3215925 | 14720.6 |
| rna polymerase sigma factor | DW035_13800 | Not Available | Negative | 3215971 - 3216522 | 21758.8 |
| ribonuclease z | DW035_13805 | Not Available | Negative | 3216602 - 3217516 | 34388.5 |
| succinate coa transferase | DW035_13810 | Not Available | Negative | 3217519 - 3219012 | 54230.7 |
| 4fe-4s dicluster domain-containing protein | DW035_13815 | Not Available | Positive | 3219280 - 3220791 | 55001.3 |
| aldo/keto reductase | DW035_13820 | Not Available | Positive | 3220825 - 3222198 | 52102.1 |
| duf1893 domain-containing protein | DW035_13825 | Not Available | Positive | 3222198 - 3222644 | 16496.9 |
| ecf transporter s component | DW035_13830 | Not Available | Positive | 3222654 - 3223154 | 18025.8 |
| duf2813 domain-containing protein | DW035_13835 | Not Available | Positive | 3223538 - 3224632 | 41921.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

