Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4435 domain-containing protein | DW035_13740 | Not Available | Negative | 3204173 - 3205021 | 32768.0 |
| atp-binding cassette domain-containing protein | DW035_13745 | Not Available | Negative | 3205030 - 3205749 | 27178.8 |
| brex system p-loop protein brxc | DW035_13750 | Not Available | Negative | 3205774 - 3209361 | 138174.0 |
| duf1788 domain-containing protein | DW035_13755 | Not Available | Negative | 3209365 - 3209976 | 24699.3 |
| duf1819 family protein | DW035_13760 | Not Available | Negative | 3209973 - 3210599 | 24031.9 |
| nicotinamide riboside transporter pnuc | DW035_13765 | Not Available | Positive | 3211141 - 3211743 | 23530.9 |
| thiamine diphosphokinase | DW035_13770 | Not Available | Positive | 3211749 - 3212411 | 24563.2 |
| lincosamide nucleotidyltransferase lnu(an2) | DW035_13775 | Not Available | Negative | 3212777 - 3213289 | 19690.2 |
| macrolide efflux mfs transporter mef(en2) | DW035_13780 | Not Available | Negative | 3213314 - 3214519 | 44135.4 |
| Trna-ser | Not Available | Not Available | Positive | 3214844 - 3214931 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

