Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator | DW035_13685 | Not Available | Negative | 3185013 - 3185636 | 23437.6 |
| hydroxylamine reductase | DW035_13690 | Not Available | Positive | 3185751 - 3187403 | 60590.1 |
| m20/m25/m40 family metallo-hydrolase | DW035_13695 | Not Available | Negative | 3187408 - 3188424 | 37843.8 |
| hypothetical protein | DW035_13705 | Not Available | Negative | 3190508 - 3190819 | 11194.2 |
| cupin domain-containing protein | DW035_13710 | Not Available | Negative | 3190905 - 3191726 | 30394.9 |
| hypothetical protein | DW035_13715 | Not Available | Positive | 3191733 - 3191933 | 7903.47 |
| brex system lon protease-like protein brxl | DW035_13720 | Not Available | Negative | 3191969 - 3194071 | 79878.8 |
| pglz domain-containing protein | DW035_13725 | Not Available | Negative | 3194083 - 3196623 | 98502.4 |
| hypothetical protein | DW035_13730 | Not Available | Negative | 3196653 - 3200444 | 147430.0 |
| brex-1 system adenine-specific dna-methyltransferase pglx | DW035_13735 | Not Available | Negative | 3200505 - 3204149 | 140877.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

