Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DW035_13480 | Not Available | Positive | 3143641 - 3144078 | 15784.8 |
| n-acetylmuramoyl-l-alanine amidase | DW035_13485 | Not Available | Positive | 3144180 - 3144623 | 16632.0 |
| undecaprenyl/decaprenyl-phosphate alpha-n-acetylglucosaminyl 1-phosphate transferase | DW035_13490 | Not Available | Positive | 3144722 - 3145828 | 41775.2 |
| xre family transcriptional regulator | DW035_13495 | Not Available | Positive | 3146040 - 3146378 | 12912.3 |
| imma/irre family metallo-endopeptidase | DW035_13500 | Not Available | Positive | 3146362 - 3147111 | 29090.2 |
| hypothetical protein | DW035_13505 | Not Available | Positive | 3147080 - 3147649 | 21948.7 |
| capsule biosynthesis protein | DW035_13510 | Not Available | Positive | 3147965 - 3150415 | 89074.5 |
| mfs transporter | DW035_13515 | Not Available | Positive | 3150438 - 3151703 | 45982.9 |
| hypothetical protein | DW035_13520 | Not Available | Positive | 3151718 - 3152422 | 26959.4 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | DW035_13525 | Not Available | Positive | 3152427 - 3153128 | 26435.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

