Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-isopropylmalate synthase | DW035_13430 | Not Available | Negative | 3128507 - 3130039 | 57369.9 |
| 3-isopropylmalate dehydratase small subunit | DW035_13435 | Not Available | Negative | 3130058 - 3130654 | 22403.4 |
| 3-isopropylmalate dehydratase large subunit | DW035_13440 | Not Available | Negative | 3130667 - 3132064 | 50926.3 |
| 2-isopropylmalate synthase | DW035_13445 | Not Available | Negative | 3132084 - 3133580 | 54697.4 |
| nicotinate phosphoribosyltransferase | DW035_13450 | Not Available | Negative | 3133891 - 3135063 | 45642.5 |
| alpha-l-fucosidase | DW035_13455 | Not Available | Negative | 3135161 - 3136483 | 49936.4 |
| virulence protein e | DW035_13460 | Not Available | Positive | 3137263 - 3139353 | 80045.4 |
| chain-length determining protein | DW035_13465 | Not Available | Negative | 3139356 - 3140486 | 41698.7 |
| capsule biosynthesis protein | DW035_13470 | Not Available | Negative | 3140491 - 3142899 | 88892.3 |
| duf4248 domain-containing protein | DW035_13475 | Not Available | Positive | 3143212 - 3143481 | 10524.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

