Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine--trna ligase | DW035_13380 | Not Available | Negative | 3117923 - 3119464 | 59463.0 |
| mbl fold metallo-hydrolase | DW035_13385 | Not Available | Negative | 3119573 - 3120370 | 30015.3 |
| udp-n-acetylmuramate dehydrogenase | DW035_13390 | Not Available | Negative | 3120367 - 3121392 | 38284.0 |
| duf4348 domain-containing protein | DW035_13395 | Not Available | Negative | 3121399 - 3122253 | 33680.9 |
| phenylalanine--trna ligase subunit alpha | DW035_13400 | Not Available | Positive | 3122399 - 3123418 | 38522.0 |
| mfs transporter | DW035_13405 | Not Available | Positive | 3123532 - 3124731 | 43653.2 |
| hypothetical protein | DW035_13410 | Not Available | Negative | 3124738 - 3125877 | 42734.2 |
| tetratricopeptide repeat protein | DW035_13415 | Not Available | Negative | 3125956 - 3126777 | 31567.4 |
| peptide-methionine (s)-s-oxide reductase | DW035_13420 | Not Available | Positive | 3126886 - 3127371 | 18395.6 |
| 3-isopropylmalate dehydrogenase | DW035_13425 | Not Available | Negative | 3127433 - 3128494 | 39084.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

