Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3989 domain-containing protein | DW035_13220 | Not Available | Positive | 3089818 - 3090144 | 12516.4 |
| conjugative transposon protein tram | DW035_13225 | Not Available | Positive | 3090092 - 3091417 | 48832.9 |
| conjugative transposon protein tran | DW035_13230 | Not Available | Positive | 3091459 - 3092478 | 38183.0 |
| conjugal transfer protein trao | DW035_13235 | Not Available | Positive | 3092480 - 3093064 | 21759.0 |
| dna (cytosine-5-)-methyltransferase | DW035_13240 | Not Available | Positive | 3093068 - 3093961 | 33351.5 |
| duf3872 domain-containing protein | DW035_13245 | Not Available | Positive | 3093984 - 3094418 | 16772.0 |
| trna (adenine-n(6)-)-methyltransferase | DW035_13250 | Not Available | Positive | 3094415 - 3094984 | 22048.6 |
| hypothetical protein | DW035_13255 | Not Available | Positive | 3094977 - 3096047 | 40858.7 |
| duf3873 domain-containing protein | DW035_13260 | Not Available | Negative | 3096157 - 3096387 | 9299.09 |
| hypothetical protein | DW035_13265 | Not Available | Negative | 3096415 - 3097002 | 22792.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

