Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts sugar transporter subunit iic | DW035_13170 | Not Available | Positive | 3075755 - 3077146 | 50181.9 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DW035_13175 | Not Available | Positive | 3077171 - 3078091 | 34586.9 |
| mfs transporter | DW035_13180 | Not Available | Positive | 3078311 - 3079768 | 53621.7 |
| beta-glucuronidase | DW035_13185 | Not Available | Positive | 3079866 - 3082733 | 110287.0 |
| hdig domain-containing protein | DW035_13190 | Not Available | Negative | 3082792 - 3084849 | 78674.6 |
| glutamate--trna ligase | DW035_13195 | Not Available | Positive | 3084935 - 3086452 | 58078.5 |
| 3-deoxy-d-manno-octulosonic acid transferase | DW035_13200 | Not Available | Positive | 3086461 - 3087700 | 47440.5 |
| conjugal transfer protein | DW035_13205 | Not Available | Positive | 3087701 - 3088143 | 16943.3 |
| conjugative transposon protein traj | DW035_13210 | Not Available | Positive | 3088145 - 3089152 | 37249.2 |
| conjugative transposon protein trak | DW035_13215 | Not Available | Positive | 3089177 - 3089800 | 24324.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

