Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemase | DW035_13120 | Not Available | Positive | 3064527 - 3066992 | 92312.0 |
| lysine exporter lyso family protein | DW035_13125 | Not Available | Negative | 3067084 - 3067686 | 21512.9 |
| duf340 domain-containing protein | DW035_13130 | Not Available | Negative | 3067683 - 3067961 | 10118.0 |
| hypothetical protein | DW035_13135 | Not Available | Negative | 3068151 - 3068630 | 18678.4 |
| sigma-70 family rna polymerase sigma factor | DW035_13140 | Not Available | Negative | 3068620 - 3069129 | 20011.9 |
| acetylglutamate kinase | DW035_13145 | Not Available | Negative | 3069195 - 3069968 | 27566.3 |
| biosynthetic arginine decarboxylase | DW035_13150 | Not Available | Negative | 3069986 - 3071878 | 71548.0 |
| shikimate kinase | DW035_13155 | Not Available | Negative | 3071910 - 3072434 | 19992.1 |
| type i dna topoisomerase | DW035_13160 | Not Available | Negative | 3072431 - 3074764 | 87842.4 |
| hypothetical protein | DW035_13165 | Not Available | Positive | 3074890 - 3075300 | 15239.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

