Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospholipase | DW035_13070 | Not Available | Positive | 3055403 - 3055822 | 16376.7 |
| metal abc transporter permease | DW035_13075 | Not Available | Positive | 3055837 - 3056658 | 29767.5 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | DW035_13080 | Not Available | Positive | 3056691 - 3057119 | 16286.1 |
| hypothetical protein | DW035_13085 | Not Available | Positive | 3057122 - 3057343 | 8351.5 |
| ribonuclease hii | DW035_13090 | Not Available | Negative | 3057418 - 3058020 | 22357.9 |
| duf3109 family protein | DW035_13095 | Not Available | Positive | 3058151 - 3058732 | 22184.6 |
| hypothetical protein | DW035_13100 | Not Available | Negative | 3058797 - 3060137 | 49501.4 |
| trk system potassium transporter trka | DW035_13105 | Not Available | Negative | 3060240 - 3061577 | 48822.1 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DW035_13110 | Not Available | Negative | 3061574 - 3063481 | 70164.5 |
| gscfa domain protein | DW035_13115 | Not Available | Positive | 3063565 - 3064551 | 38481.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

