Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 97 protein | DW035_13020 | Not Available | Negative | 3034687 - 3037410 | 103310.0 |
| dmt family transporter | DW035_13025 | Not Available | Negative | 3037551 - 3038459 | 33151.5 |
| m24 family metallopeptidase | DW035_13030 | Not Available | Negative | 3038456 - 3039829 | 51310.8 |
| hypothetical protein | DW035_13035 | Not Available | Negative | 3039842 - 3041194 | 52226.9 |
| duf4859 domain-containing protein | DW035_13040 | Not Available | Negative | 3041273 - 3042283 | 36712.4 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_13045 | Not Available | Negative | 3042338 - 3044044 | 64811.7 |
| tonb-dependent receptor | DW035_13050 | Not Available | Negative | 3044058 - 3047087 | 112089.0 |
| glycoside hydrolase family 127 protein | DW035_13055 | Not Available | Negative | 3047114 - 3049552 | 91237.6 |
| hybrid sensor histidine kinase/response regulator | DW035_13060 | Not Available | Positive | 3050152 - 3054117 | 151503.0 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | DW035_13065 | Not Available | Positive | 3054159 - 3055391 | 45497.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

