Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| agmatine deiminase family protein | DW035_12970 | Not Available | Positive | 3018764 - 3019801 | 39359.5 |
| acyltransferase | DW035_12975 | Not Available | Positive | 3019798 - 3020685 | 33264.6 |
| hypothetical protein | DW035_12980 | Not Available | Positive | 3021036 - 3021461 | 16988.3 |
| trkh family potassium uptake protein | DW035_12985 | Not Available | Negative | 3021474 - 3022979 | 55542.8 |
| hlyc/corc family transporter | DW035_12990 | Not Available | Negative | 3023551 - 3024852 | 47699.1 |
| l-glyceraldehyde 3-phosphate reductase | DW035_12995 | Not Available | Negative | 3025001 - 3026002 | 37435.8 |
| alpha/beta fold hydrolase | DW035_13000 | Not Available | Positive | 3026159 - 3027415 | 46884.6 |
| s9 family peptidase | DW035_13005 | Not Available | Negative | 3027444 - 3029696 | 86018.7 |
| glycoside hydrolase family 127 protein | DW035_13010 | Not Available | Negative | 3029817 - 3032225 | 90319.9 |
| glycoside hydrolase | DW035_13015 | Not Available | Negative | 3032256 - 3034670 | 90837.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

