Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | DW035_12855 | Not Available | Positive | 2989402 - 2989794 | 15002.0 |
| hypothetical protein | DW035_12860 | Not Available | Negative | 2989776 - 2990564 | 30285.4 |
| tagaturonate reductase | DW035_12865 | Not Available | Negative | 2990700 - 2992139 | 54000.4 |
| glucuronate isomerase | DW035_12870 | Not Available | Positive | 2992452 - 2993858 | 54302.4 |
| hypothetical protein | DW035_12875 | Not Available | Negative | 2993874 - 2994053 | 6908.41 |
| mbl fold metallo-hydrolase | DW035_12880 | Not Available | Positive | 2994098 - 2994904 | 30448.4 |
| duf4293 family protein | DW035_12885 | Not Available | Negative | 2994989 - 2995444 | 17404.1 |
| rna polymerase rpb6 | DW035_12890 | Not Available | Negative | 2995570 - 2995905 | 13004.4 |
| outer membrane protein assembly factor bamd | DW035_12895 | Not Available | Negative | 2995934 - 2996770 | 32255.1 |
| excinuclease abc subunit uvrb | DW035_12900 | Not Available | Positive | 2996924 - 2998966 | 78049.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

