Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_12730 | Not Available | Negative | 2957917 - 2958325 | 16535.3 |
| had family phosphatase | DW035_12735 | Not Available | Positive | 2958885 - 2959694 | 30448.1 |
| ferredoxin | DW035_12740 | Not Available | Negative | 2959681 - 2960214 | 19368.2 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DW035_12745 | Not Available | Negative | 2960489 - 2961676 | 44351.3 |
| diacylglycerol kinase family lipid kinase | DW035_12750 | Not Available | Positive | 2961901 - 2962935 | 38067.1 |
| methyltransferase domain-containing protein | DW035_12755 | Not Available | Negative | 2962946 - 2963662 | 26519.8 |
| endopeptidase la | DW035_12760 | Not Available | Positive | 2963849 - 2966332 | 93083.8 |
| trna guanosine(34) transglycosylase tgt | DW035_12765 | Not Available | Positive | 2966329 - 2967459 | 42509.3 |
| yjgp/yjgq family permease | DW035_12770 | Not Available | Positive | 2967481 - 2968656 | 45522.9 |
| nadph-flavin oxidoreductase | DW035_12775 | Not Available | Negative | 2968733 - 2969728 | 37109.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

