Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW035_12405 | Not Available | Negative | 2889341 - 2891446 | 80014.0 |
| helix-turn-helix domain-containing protein | DW035_12410 | Not Available | Negative | 2891538 - 2892533 | 37534.2 |
| hypothetical protein | DW035_12415 | Not Available | Negative | 2892621 - 2892878 | 9848.95 |
| transcriptional regulator | DW035_12420 | Not Available | Negative | 2892875 - 2893093 | 8240.94 |
| hypothetical protein | DW035_12425 | Not Available | Negative | 2893137 - 2893502 | 13787.0 |
| hypothetical protein | DW035_12430 | Not Available | Negative | 2893831 - 2895939 | 77091.5 |
| hesa/moeb/thif family protein | DW035_12435 | Not Available | Negative | 2896044 - 2896760 | 26164.6 |
| 2-iminoacetate synthase thih | DW035_12440 | Not Available | Negative | 2896993 - 2898144 | 43778.3 |
| phosphomethylpyrimidine synthase thic | DW035_12445 | Not Available | Negative | 2898196 - 2899896 | 63798.0 |
| thiazole synthase | DW035_12450 | Not Available | Negative | 2899956 - 2900732 | 27700.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

