Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DW035_12345 | Not Available | Negative | 2875224 - 2877581 | 88468.0 |
| abc transporter permease | DW035_12350 | Not Available | Negative | 2877613 - 2879973 | 88905.4 |
| duf2807 domain-containing protein | DW035_12355 | Not Available | Negative | 2880009 - 2880635 | 22383.9 |
| hlyd family efflux transporter periplasmic adaptor subunit | DW035_12360 | Not Available | Negative | 2880649 - 2881899 | 47998.6 |
| tolc family protein | DW035_12365 | Not Available | Negative | 2881925 - 2883295 | 52107.1 |
| sigma-54-dependent fis family transcriptional regulator | DW035_12370 | Not Available | Positive | 2883508 - 2884881 | 51561.8 |
| pas domain-containing sensor histidine kinase | DW035_12375 | Not Available | Positive | 2884871 - 2886175 | 48888.5 |
| hypothetical protein | DW035_12380 | Not Available | Negative | 2886250 - 2886696 | 17077.8 |
| naat family transporter | DW035_12385 | Not Available | Negative | 2886864 - 2887508 | 23827.3 |
| hypothetical protein | DW035_12395 | Not Available | Negative | 2888336 - 2888779 | 17344.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

