Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW035_12295 | Not Available | Negative | 2861586 - 2863325 | 66946.8 |
| tonb-dependent receptor | DW035_12300 | Not Available | Negative | 2863342 - 2866464 | 114098.0 |
| prolipoprotein diacylglyceryl transferase | DW035_12305 | Not Available | Negative | 2866659 - 2867486 | 31529.0 |
| holliday junction branch migration protein ruva | DW035_12310 | Not Available | Negative | 2867715 - 2868311 | 21320.2 |
| diaminopimelate dehydrogenase | DW035_12315 | Not Available | Positive | 2868483 - 2869382 | 32254.9 |
| sdr family nad(p)-dependent oxidoreductase | DW035_12320 | Not Available | Negative | 2869451 - 2870296 | 31253.2 |
| nadh:flavin oxidoreductase | DW035_12325 | Not Available | Negative | 2870298 - 2871521 | 45339.2 |
| duf1295 domain-containing protein | DW035_12330 | Not Available | Negative | 2871536 - 2872303 | 29180.0 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | DW035_12335 | Not Available | Negative | 2872525 - 2874369 | 66658.6 |
| superoxide dismutase | DW035_12340 | Not Available | Positive | 2874580 - 2875152 | 21856.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

