Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rod shape-determining protein roda | DW035_12190 | Not Available | Positive | 2830453 - 2831910 | 54299.6 |
| gliding motility lipoprotein gldh | DW035_12195 | Not Available | Negative | 2831845 - 2832396 | 20886.8 |
| hypothetical protein | DW035_12200 | Not Available | Negative | 2832383 - 2833780 | 52165.8 |
| dna polymerase iii subunit delta' | DW035_12205 | Not Available | Negative | 2833787 - 2834917 | 43573.3 |
| cardiolipin synthase | DW035_12210 | Not Available | Negative | 2835021 - 2836310 | 49110.8 |
| malate dehydrogenase | DW035_12215 | Not Available | Positive | 2836893 - 2837894 | 35753.0 |
| pap2 family protein | DW035_12220 | Not Available | Positive | 2838198 - 2839682 | 55708.0 |
| dna primase | DW035_12225 | Not Available | Positive | 2839734 - 2841863 | 81286.8 |
| gtp cyclohydrolase i fole | DW035_12230 | Not Available | Negative | 2841913 - 2842506 | 22738.8 |
| spor domain-containing protein | DW035_12235 | Not Available | Negative | 2842509 - 2842970 | 17304.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

