Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tmrna,resume consensus sequence (at 89): tttatctggcaacgaaaa | Not Available | Not Available | Positive | 2819853 - 2820248 | Not Available |
| Tmrna,resume consensus sequence (at 395): tttatctggcaacgaaaa | Not Available | Not Available | Positive | 2820033 - 2820554 | Not Available |
| phosphoribosylaminoimidazolecarboxamide formyltransferase | DW035_12150 | Not Available | Negative | 2820982 - 2822160 | 44084.4 |
| carbonic anhydrase | DW035_12155 | Not Available | Positive | 2822318 - 2822866 | 20568.9 |
| inorganic phosphate transporter | DW035_12160 | Not Available | Negative | 2822927 - 2825221 | 85074.2 |
| imp cyclohydrolase | DW035_12165 | Not Available | Positive | 2825466 - 2826059 | 21904.3 |
| rod shape-determining protein | DW035_12170 | Not Available | Positive | 2826132 - 2827154 | 36950.9 |
| rod shape-determining protein mrec | DW035_12175 | Not Available | Positive | 2827243 - 2828094 | 31658.7 |
| rod shape-determining protein mred | DW035_12180 | Not Available | Positive | 2828125 - 2828622 | 19158.0 |
| penicillin-binding protein 2 | DW035_12185 | Not Available | Positive | 2828622 - 2830472 | 69331.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

