Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylenetetrahydrofolate reductase | DW035_11975 | Not Available | Positive | 2778988 - 2779941 | 36060.4 |
| alpha-l-fucosidase | DW035_11980 | Not Available | Negative | 2779955 - 2782045 | 79304.2 |
| duf5020 family protein | DW035_11985 | Not Available | Positive | 2782161 - 2782865 | 27409.4 |
| ncs2 family permease | DW035_11990 | Not Available | Positive | 2782902 - 2784188 | 45705.7 |
| atp-binding cassette domain-containing protein | DW035_11995 | Not Available | Positive | 2784543 - 2785460 | 34855.1 |
| abc transporter permease | DW035_12000 | Not Available | Positive | 2785479 - 2786732 | 46175.6 |
| hypothetical protein | DW035_12005 | Not Available | Negative | 2786826 - 2787434 | 23120.7 |
| methylmalonyl-coa mutase | DW035_12010 | Not Available | Negative | 2787683 - 2789836 | 79470.1 |
| methylmalonyl-coa mutase small subunit | DW035_12015 | Not Available | Negative | 2789845 - 2791755 | 70392.0 |
| putative transporter | DW035_12020 | Not Available | Positive | 2792052 - 2793731 | 60656.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

