Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | DW035_11775 | Not Available | Negative | 2731454 - 2733778 | 87358.6 |
| transglutaminase domain-containing protein | DW035_11780 | Not Available | Negative | 2734240 - 2734890 | 25009.2 |
| tonb-dependent receptor | DW035_11785 | Not Available | Negative | 2735581 - 2737911 | 87732.9 |
| hypothetical protein | DW035_11790 | Not Available | Negative | 2738252 - 2738452 | 7920.71 |
| hypothetical protein | DW035_11795 | Not Available | Negative | 2738563 - 2738910 | 13769.5 |
| site-specific integrase | DW035_11800 | Not Available | Negative | 2738913 - 2740205 | 50676.1 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DW035_11805 | Not Available | Negative | 2740825 - 2743104 | 86516.3 |
| lysm peptidoglycan-binding domain-containing protein | DW035_11810 | Not Available | Negative | 2743183 - 2744448 | 48017.9 |
| hypothetical protein | DW035_11815 | Not Available | Negative | 2744452 - 2745183 | 28044.3 |
| parb/repb/spo0j family partition protein | DW035_11820 | Not Available | Negative | 2745246 - 2746142 | 33389.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

