Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW035_11575 | Not Available | Positive | 2682041 - 2683279 | 46806.5 |
| hypothetical protein | DW035_11580 | Not Available | Positive | 2683315 - 2684940 | 60785.7 |
| duf4421 domain-containing protein | DW035_11585 | Not Available | Negative | 2685006 - 2686025 | 39471.6 |
| gfo/idh/moca family oxidoreductase | DW035_11590 | Not Available | Negative | 2686182 - 2687171 | 36857.2 |
| glutamine abc transporter substrate-binding protein | DW035_11595 | Not Available | Negative | 2687184 - 2688002 | 31186.4 |
| hypothetical protein | DW035_11600 | Not Available | Negative | 2688013 - 2690100 | 80002.1 |
| 2-oxoglutarate ferredoxin oxidoreductase subunit gamma | DW035_11605 | Not Available | Negative | 2690272 - 2690814 | 19939.7 |
| 2-oxoglutarate oxidoreductase | DW035_11610 | Not Available | Negative | 2690830 - 2691603 | 28297.4 |
| 3-methyl-2-oxobutanoate dehydrogenase subunit vorb | DW035_11615 | Not Available | Negative | 2691799 - 2692881 | 39307.6 |
| 4fe-4s dicluster domain-containing protein | DW035_11620 | Not Available | Negative | 2692911 - 2693141 | 8214.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

