Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 97 protein | DW035_11310 | Not Available | Positive | 2631649 - 2633805 | 81860.6 |
| duf4968 domain-containing protein | DW035_11315 | Not Available | Positive | 2633987 - 2636473 | 95152.6 |
| asnc family transcriptional regulator | DW035_11325 | Not Available | Negative | 2636948 - 2637418 | 17449.3 |
| nudix domain-containing protein | DW035_11330 | Not Available | Positive | 2637693 - 2638223 | 19819.7 |
| tetratricopeptide repeat protein | DW035_11335 | Not Available | Positive | 2638232 - 2641249 | 114665.0 |
| tonb-dependent receptor | DW035_11340 | Not Available | Positive | 2641251 - 2642912 | 62209.6 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | DW035_11345 | Not Available | Negative | 2642915 - 2643955 | 38586.0 |
| peptide chain release factor n(5)-glutamine methyltransferase | DW035_11350 | Not Available | Positive | 2643988 - 2644830 | 32163.5 |
| recx family transcriptional regulator | DW035_11355 | Not Available | Positive | 2644827 - 2645306 | 19078.9 |
| comf family protein | DW035_11360 | Not Available | Positive | 2645290 - 2645979 | 25587.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

