Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DW035_11255 | Not Available | Positive | 2613544 - 2615115 | 58932.6 |
| duf5114 domain-containing protein | DW035_11260 | Not Available | Positive | 2615134 - 2616582 | 51221.9 |
| arabinogalactan endo-1,4-beta-galactosidase | DW035_11265 | Not Available | Positive | 2616597 - 2617694 | 41096.9 |
| duf4982 domain-containing protein | DW035_11270 | Not Available | Positive | 2617777 - 2620269 | 93707.0 |
| arabinogalactan endo-1,4-beta-galactosidase | DW035_11275 | Not Available | Positive | 2620276 - 2621289 | 38661.0 |
| hypothetical protein | DW035_11285 | Not Available | Positive | 2621863 - 2623458 | 62290.3 |
| tonb-dependent receptor | DW035_11290 | Not Available | Positive | 2623673 - 2626702 | 111242.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_11295 | Not Available | Positive | 2626721 - 2628271 | 57330.4 |
| susf/suse family outer membrane protein | DW035_11300 | Not Available | Positive | 2628291 - 2629814 | 56890.5 |
| cycloisomaltooligosaccharide glucanotransferase | DW035_11305 | Not Available | Positive | 2629835 - 2631634 | 67797.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

