Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit alpha | DW035_11205 | Not Available | Positive | 2597063 - 2598055 | 37536.1 |
| 50s ribosomal protein l17 | DW035_11210 | Not Available | Positive | 2598059 - 2598553 | 18266.0 |
| sufe family protein | DW035_11215 | Not Available | Negative | 2598733 - 2599164 | 16351.7 |
| glutamine cyclotransferase | DW035_11220 | Not Available | Negative | 2599180 - 2600178 | 37044.4 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | DW035_11225 | Not Available | Negative | 2600260 - 2602029 | 66060.3 |
| hypothetical protein | DW035_11230 | Not Available | Negative | 2602213 - 2603826 | 60971.5 |
| phosphate butyryltransferase | DW035_11235 | Not Available | Positive | 2604027 - 2604947 | 33441.7 |
| butyrate kinase | DW035_11240 | Not Available | Positive | 2604959 - 2606035 | 39105.0 |
| response regulator | DW035_11245 | Not Available | Positive | 2607162 - 2610434 | 124793.0 |
| tonb-dependent receptor | DW035_11250 | Not Available | Positive | 2610550 - 2613522 | 108938.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

