Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s5 | DW035_11155 | Not Available | Positive | 2591816 - 2592334 | 17939.0 |
| 50s ribosomal protein l30 | DW035_11160 | Not Available | Positive | 2592346 - 2592522 | 6489.21 |
| 50s ribosomal protein l15 | DW035_11165 | Not Available | Positive | 2592553 - 2592999 | 15613.9 |
| preprotein translocase subunit secy | DW035_11170 | Not Available | Positive | 2593004 - 2594350 | 49138.4 |
| type i methionyl aminopeptidase | DW035_11175 | Not Available | Positive | 2594367 - 2595164 | 29255.3 |
| translation initiation factor if-1 | DW035_11180 | Not Available | Positive | 2595166 - 2595384 | 8235.14 |
| 50s ribosomal protein l36 | DW035_11185 | Not Available | Positive | 2595400 - 2595516 | 4586.82 |
| 30s ribosomal protein s13 | DW035_11190 | Not Available | Positive | 2595550 - 2595930 | 14149.3 |
| 30s ribosomal protein s11 | DW035_11195 | Not Available | Positive | 2595939 - 2596328 | 13878.8 |
| 30s ribosomal protein s4 | DW035_11200 | Not Available | Positive | 2596446 - 2597051 | 22605.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

