Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| radical sam mobile pair protein b | DW035_11005 | Not Available | Negative | 2570173 - 2571048 | 34090.1 |
| mbl fold metallo-hydrolase | DW035_11010 | Not Available | Negative | 2571281 - 2572057 | 28955.2 |
| arac family transcriptional regulator | DW035_11015 | Not Available | Positive | 2572184 - 2573083 | 35599.8 |
| Trna-met | Not Available | Not Available | Positive | 2573368 - 2573441 | Not Available |
| calcium-translocating p-type atpase, pmca-type | DW035_11025 | Not Available | Positive | 2573604 - 2576231 | 96405.8 |
| had family phosphatase | DW035_11030 | Not Available | Positive | 2576228 - 2576851 | 24193.2 |
| riboflavin biosynthesis protein ribf | DW035_11035 | Not Available | Positive | 2576852 - 2577784 | 35013.3 |
| atp-dependent rna helicase | DW035_11040 | Not Available | Positive | 2577844 - 2579733 | 71438.3 |
| duf3467 domain-containing protein | DW035_11045 | Not Available | Positive | 2579936 - 2580259 | 12052.5 |
| 30s ribosomal protein s12 | DW035_11050 | Not Available | Positive | 2580446 - 2580853 | 14779.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

