Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4837 family protein | DW035_10950 | Not Available | Positive | 2558486 - 2559550 | 40894.0 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | DW035_10955 | Not Available | Positive | 2559553 - 2560647 | 40379.4 |
| ndp-sugar synthase | DW035_10960 | Not Available | Positive | 2560649 - 2561356 | 26539.9 |
| hypothetical protein | DW035_10965 | Not Available | Positive | 2561419 - 2562285 | 32600.9 |
| cdp-alcohol phosphatidyltransferase family protein | DW035_10970 | Not Available | Positive | 2562285 - 2563232 | 37227.4 |
| upf0104 family protein | DW035_10975 | Not Available | Positive | 2563232 - 2564239 | 38496.2 |
| had family hydrolase | DW035_10980 | Not Available | Positive | 2564232 - 2564954 | 27253.6 |
| sugar mfs transporter | DW035_10985 | Not Available | Positive | 2564968 - 2566173 | 44354.3 |
| rlua family pseudouridine synthase | DW035_10990 | Not Available | Negative | 2566508 - 2568127 | 61585.9 |
| beta-hexosaminidase | DW035_10995 | Not Available | Positive | 2568364 - 2569995 | 61900.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

