Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diphosphate--fructose-6-phosphate 1-phosphotransferase | DW035_10900 | Not Available | Positive | 2544535 - 2546178 | 59872.8 |
| glycoside hydrolase family 25 protein | DW035_10905 | Not Available | Positive | 2546340 - 2547254 | 35764.9 |
| atp-dependent chaperone clpb | DW035_10910 | Not Available | Negative | 2547368 - 2549956 | 97254.6 |
| hypothetical protein | DW035_10915 | Not Available | Positive | 2550365 - 2550745 | 14182.1 |
| hypothetical protein | DW035_10920 | Not Available | Positive | 2550785 - 2551366 | 21545.0 |
| lysr family transcriptional regulator | DW035_10925 | Not Available | Positive | 2551379 - 2552275 | 33853.0 |
| mfs transporter | DW035_10930 | Not Available | Negative | 2552298 - 2553566 | 47454.8 |
| spoiid/lytb domain-containing protein | DW035_10935 | Not Available | Negative | 2553579 - 2554889 | 49811.9 |
| duf4922 domain-containing protein | DW035_10940 | Not Available | Negative | 2554895 - 2557327 | 92472.4 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | DW035_10945 | Not Available | Positive | 2557417 - 2558472 | 39837.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

