Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidinol dehydrogenase | DW035_10800 | Not Available | Negative | 2525989 - 2527266 | 46300.8 |
| atp phosphoribosyltransferase | DW035_10805 | Not Available | Negative | 2527298 - 2528149 | 31474.4 |
| paai family thioesterase | DW035_10810 | Not Available | Negative | 2528405 - 2528890 | 18729.4 |
| dabb family protein | DW035_10815 | Not Available | Negative | 2528903 - 2529202 | 11034.3 |
| uridine kinase | DW035_10820 | Not Available | Positive | 2529273 - 2529884 | 23316.5 |
| lytic transglycosylase f | DW035_10825 | Not Available | Positive | 2529881 - 2531257 | 52059.3 |
| arsr family transcriptional regulator | DW035_10830 | Not Available | Positive | 2531606 - 2531932 | 12364.2 |
| thioredoxin | DW035_10835 | Not Available | Positive | 2532050 - 2532457 | 15394.4 |
| sulfite exporter taue/safe family protein | DW035_10840 | Not Available | Positive | 2532470 - 2533177 | 25715.5 |
| thioredoxin family protein | DW035_10845 | Not Available | Positive | 2533211 - 2533447 | 8584.76 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

