Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-f family atpase | DW035_10750 | Not Available | Positive | 2516316 - 2517935 | 61077.9 |
| acyltransferase | DW035_10755 | Not Available | Positive | 2518016 - 2519167 | 44005.8 |
| cytidine deaminase | DW035_10760 | Not Available | Negative | 2519174 - 2519653 | 17756.2 |
| lysm peptidoglycan-binding domain-containing protein | DW035_10765 | Not Available | Positive | 2519795 - 2520685 | 34460.5 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | DW035_10770 | Not Available | Negative | 2520691 - 2521164 | 18174.2 |
| dmt family transporter | DW035_10775 | Not Available | Negative | 2521197 - 2522093 | 32565.7 |
| carboxylating nicotinate-nucleotide diphosphorylase | DW035_10780 | Not Available | Positive | 2522205 - 2523059 | 31483.5 |
| duf4923 family protein | DW035_10785 | Not Available | Positive | 2523127 - 2523741 | 21241.5 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | DW035_10790 | Not Available | Negative | 2523819 - 2524940 | 42456.7 |
| histidinol-phosphate transaminase | DW035_10795 | Not Available | Negative | 2524937 - 2525986 | 40229.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

