Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpod/siga | DW035_10640 | Not Available | Positive | 2488702 - 2489562 | 32835.4 |
| hypothetical protein | DW035_10645 | Not Available | Positive | 2489761 - 2490135 | 14271.2 |
| hypothetical protein | DW035_10650 | Not Available | Positive | 2490141 - 2491409 | 47192.7 |
| divalent metal cation transporter | DW035_10655 | Not Available | Positive | 2491487 - 2492749 | 46121.1 |
| had family hydrolase | DW035_10665 | Not Available | Positive | 2493965 - 2494612 | 24461.2 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | DW035_10670 | Not Available | Positive | 2494677 - 2495498 | 29474.0 |
| mfs transporter | DW035_10675 | Not Available | Positive | 2495606 - 2496727 | 41758.9 |
| energy-dependent translational throttle protein etta | DW035_10680 | Not Available | Positive | 2496747 - 2498435 | 63979.5 |
| alkaline phosphatase family protein | DW035_10685 | Not Available | Negative | 2498607 - 2499794 | 45600.6 |
| tonb-dependent receptor | DW035_10690 | Not Available | Negative | 2499880 - 2503056 | 117741.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

