Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-glucanase | DW035_10380 | Not Available | Positive | 2431571 - 2432716 | 43572.1 |
| response regulator | DW035_10385 | Not Available | Negative | 2432822 - 2436754 | 149048.0 |
| aspartate-semialdehyde dehydrogenase | DW035_10390 | Not Available | Negative | 2437374 - 2438384 | 37180.6 |
| cation:proton antiporter | DW035_10395 | Not Available | Positive | 2438574 - 2440718 | 80398.5 |
| trna threonylcarbamoyladenosine dehydratase | DW035_10400 | Not Available | Positive | 2440715 - 2441440 | 26869.8 |
| abc transporter atp-binding protein | DW035_10405 | Not Available | Positive | 2441447 - 2442097 | 23609.7 |
| endonuclease | DW035_10410 | Not Available | Negative | 2442171 - 2443040 | 32836.8 |
| gntr family transcriptional regulator | DW035_10415 | Not Available | Positive | 2443207 - 2444043 | 31997.7 |
| hypothetical protein | DW035_10420 | Not Available | Negative | 2444111 - 2445073 | 37971.5 |
| duf4435 domain-containing protein | DW035_10425 | Not Available | Negative | 2445117 - 2446115 | 39358.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

