Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | strain AF39-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Gallus gallus, Bos |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1032276 bp
Thymine Count
1042933 bp
Guanine Count
824714 bp
Cytosine Count
828950 bp
Genome Length
3729283 bp
Protein-coding Genes
3024 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | DW035_10330 | Not Available | Positive | 2412958 - 2414250 | 47268.6 |
| neuraminidase | DW035_10335 | Not Available | Positive | 2414485 - 2415762 | 48537.9 |
| duf2264 domain-containing protein | DW035_10340 | Not Available | Positive | 2415778 - 2418087 | 89325.9 |
| tonb-dependent receptor | DW035_10345 | Not Available | Positive | 2418484 - 2421609 | 116202.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_10350 | Not Available | Positive | 2421624 - 2423513 | 72028.4 |
| susc/raga family tonb-linked outer membrane protein | DW035_10355 | Not Available | Positive | 2423547 - 2426564 | 111918.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW035_10360 | Not Available | Positive | 2426596 - 2428284 | 64062.7 |
| duf4959 domain-containing protein | DW035_10365 | Not Available | Positive | 2428314 - 2429195 | 32965.1 |
| duf1735 domain-containing protein | DW035_10370 | Not Available | Positive | 2429208 - 2430641 | 54095.3 |
| glycoside hydrolase family 16 protein | DW035_10375 | Not Available | Positive | 2430719 - 2431561 | 32685.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

